PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000595671
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C2H2
Protein Properties Length: 174aa    MW: 19229.4 Da    PI: 9.639
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000595671genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.60.000884163123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   ++C+ C++ F++   L  H  +H
  MDP0000595671 41 FVCKTCDREFPSFQALGGHRASH 63
                   89**********99999998887 PP

2zf-C2H213.90.0001692114123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ++Cp+Cg  F+    L  H+r+H
  MDP0000595671  92 HECPICGLEFTVGQALGGHMRRH 114
                    79********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.92E-939114No hitNo description
PfamPF139122.0E-124065IPR007087Zinc finger, C2H2
SMARTSM003550.224163IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.4734168IPR007087Zinc finger, C2H2
PROSITE patternPS0002804363IPR007087Zinc finger, C2H2
PfamPF139127.8E-1092116IPR007087Zinc finger, C2H2
PROSITE profilePS501578.97492114IPR007087Zinc finger, C2H2
SMARTSM003550.06692114IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028094114IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MKRSRQDETL DMVNCLMLLS KVGEPDSSPI KYENSKNDRV FVCKTCDREF PSFQALGGHR  60
ASHKKPKLMP GGAVDLLHLA EFPGSPVKPK KHECPICGLE FTVGQALGGH MRRHRDVIQA  120
AAVRAQPSPP MPVLKKSNSS KRVSCLNMEL NLDLHLAPPG HHQYDLTKLQ MIS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.117870.0fruit| root
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008357752.11e-126PREDICTED: zinc finger protein ZAT12
SwissprotQ424102e-38ZAT12_ARATH; Zinc finger protein ZAT12
TrEMBLD9ZIS51e-100D9ZIS5_MALDO; C2H2L domain class transcription factor
STRINGPOPTR_0009s03280.13e-48(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31634175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59820.11e-39C2H2 family protein